Biblio

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Submitted
[fg-2588] Chen, W., R. F. da Silva, E. Deelman, and R. Sakellariou, "Balanced Task Clustering in Scientific Workflows", The 9th IEEE International Conference on e-Science (eScience 2013), to appear, Beijing, China, Oct 23-25, 2013, Submitted.  Download: balance.pdf (513.81 KB)
2014
[fg-2833] de Silva, R. F., W. Chen, G. Juve, K. vahi, and E. Deelman, "Community Resources for Enabling Research in Distributed Scientific Workflows", the 10th IEEE International Conference on eScience 2014 (eScience 2014), Guaruja, SP, Brazil, Oct 20-24, 2014.  Download: communityresources-weiweichen.pdf (421.05 KB)
[fg-2820] Smith, W., and S. Smallen, "Building an Information System for a Distributed Testbed", the 2014 Annual ConferenceProceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment - XSEDE '14, Atlanta, GA, USANew York, New York, USA, ACM Press, pp. 1 - 8, 2014.
2013
[fg-2535] Figueiredo, R., Panel on Clouds, , CCGrid 2013 Delft, The Netherlands, May 2013.
[fg-2762] Prathibha, S., "Monitoring the Performance Analysis Of Executing Workflow applications with different resource types in a cloud environment,", 1st International Symposium on Big Data and Cloud Computing Challenges(ISBCC-2014), VIT University, Chennai, India, March 27-28,2013.  Download: soma.pdf (408.18 KB)
[fg-2589] Chen, W., E. Deelman, and R. Sakellariou, "Imbalance Optimization in Scientific Workflows", International Conference on Supercomputing (ICS 2013) , Eugene, Oregon, Jun 10-14, 2013.  Download: balancing-ics13.pdf (116.16 KB)
[fg-2583] von Laszewski, G., and G. C. Fox, FutureGrid UAB Meeting, , XSEDE13 San Diego, CA, 7/24/2013.  Download: FG-XSEDE13-July24-2013.pptx (2.09 MB)
[fg-2584] Fox, G., Remarks on MOOC's: Open Grid Forum BOF, , XSEDE13, San Diego, CA, 7/24/2013.  Download: OGFMOOC-July24-2013.pptx (4.4 MB)
[fg-2603] Bosin, A., "Resource Provisioning for e-Science Environments", International Journal of Grid and High Performance Computing, vol. 5, issue 1: IGI Global, pp. 1 - 24, 31/2013. Abstract
[fg-2721] Canonico, M., A. Lombado, and I. Lovotti, "CloudTUI: a multi Cloud platform Text User Interface", International conference on Perfomance Evaluation Methodologies and Tools, Turin, Italy, 12/2013.  Download: cloudtui.pdf (202.24 KB)
[fg-2695] S, S., and A. Basu, "Performance of Eucalyptus and OpenStack Clouds on FutureGrid", International Journal of Computer Applications, vol. 80, issue 13, pp. 31 - 37, 10/2013.
[fg-2034] Fox, G., G. von Laszewski, J. Diaz, K. Keahey, J. Fortes, R. Figueiredo, S. Smallen, W. Smith, and A. Grimshaw, "FutureGrid - a reconfigurable testbed for Cloud, HPC, and Grid Computing", Contemporary High Performance Computing: From Petascale toward Exascale: Chapman & Hall, 04/2013.  Download: vonLaszewski-fg-bookchapter.pdf (1.6 MB)
[10.1371/journal.pcbi.1002950] Larsson, P., and P. M. Kasson, "Lipid Tail Protrusion in Simulations Predicts Fusogenic Activity of Influenza Fusion Peptide Mutants and Conformational Models", PLoS Comput Biol, vol. 9, no. 3: Public Library of Science, pp. e1002950, 03, 2013. Abstract  Download: journal.pcbi_.1002950.pdf (1022.66 KB)
[fg-2736] Nelson, J., "Analyzing PAPI Performance on Virtual Machines", VMware Technical Journal, vol. Winter 2013, 2013.
[Marathe:2013:CSH:2493123.2462919] Marathe, A., R. Harris, D. K. Lowenthal, B. R. de Supinski, B. Rountree, M. Schulz, and X. Yuan, "A comparative study of high-performance computing on the cloud", Proceedings of the 22nd international symposium on High-performance parallel and distributed computing, New York, NY, USA, ACM, pp. 239–250, 2013.  Download: cloud-final.pdf (194.15 KB)
2012
[fg-2208] Lee, K., T. Choi, P. O. Boykin, and R. J. Figueiredo, "MatchTree: Flexible, Scalable, and Fault-tolerant Wide-area Resource Discovery with Distributed Matchmaking and Aggregation", Future Generation Computer Systems, vol. to be published , issue to be published , to be published , 2012.
[fg-2636] Chen, W., and E. Deelman, "Fault Tolerant Clustering in Scientific Workflows", IEEE International Workshop on Scientific Workflows (SWF), in conjunction with 8th IEEE World Congress on Servicess, Honolulu, Hawaii, Jun 2012.  Download: ft-final.pdf (998.71 KB)
[fg-1923] Bosin, A., M. Dessalvi, G. M. Mereu, and G. Serra, "Enhancing Eucalyptus Community Cloud", Intelligent Information Management, vol. 04, issue 03, pp. 52 - 59, 2012. Abstract
[fg-2395] Figueiredo, R., Peer-to-peer Virtual Private Networks and Applications, , Grid'5000 Summer School, Nantes, France, 12/2012.  Download: grid5k-nantes-rf.pdf (1.35 MB)
[fg-276-cloud] von Laszewski, G., Cloud Computing for K-12, , Purdue University, 10/2012.  Download: Cloud Computing for K-12-oct-5.pptx (48.07 MB)
[fg-2231] Bates, A., B. Mood, J. Pletcher, H. Pruse, M. Valafar, and K. Butler, "Detecting Co-Residency with Active Traffic Analysis Techniques", ACM Cloud Computer Security Workshop, Raleigh, NC, ACM, 10/2012.
[fg-2202] Chen, W., and E. Deelman, "WorkflowSim: A Toolkit for Simulating Scientific Workflows in Distributed Environments", The 8th IEEE International Conference on eScience, Chicago, IEEE, 10/2012. Abstract
[fg-2045] von Laszewski, G., H. Lee, J. Diaz, F. Wang, K. Tanaka, S. Karavinkoppa, G. C. Fox, and T. Furlani, "Design of a Dynamic Provisioning System for a Federated Cloud and Bare-metal Environment", Workshop on Cloud Services, Federation, and the 8th Open Cirrus Summit, San Jose, CA, IEEE, 09/2012.  Download: vonLaszewski-federated-cloud-07-14-2012.pdf (1.06 MB)
[fg-2065] Schatz, M., "Application: Biology on the Cloud", Science Cloud Summer School 2012, Bloomington, IN, Cold Spring Harbor, 07/2012.
[fg-2086] Stevens, R., "Applications of Cloud: DOE Systems Biology Knowledgebase", Science Cloud Summer School 2012, Bloomington, IN, Argonne and University of Chicago, 07/2012.  Download: Summer-School-2012.ppt (42.12 MB)
[fg-2088] Stanzione, D., "Applications of Cloud: The iPlant Collaborative: Science in the Cloud for Plant Biology", Science Cloud Summer School 2012, Bloomington, IN, TACC, 07/2012.  Download: VSCSE_iPlant_Stanzione_Aug_2012.pdf (14.55 MB)
[fg-2075] Thain, D., "Building Scalable Data Intensive Applications on the Cloud with Makeflow and WorkQueue", Science Cloud Summer School 2012, Bloomington, IN, Notre Dame, 07/2012.
[fg-2087] Wang, X. F., "Cloud Technology: Cloud Security: New Challenges and New Opportunities", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: cloud security - 3.pptx (2.32 MB)
[fg-2089] Younge, A. J., "Cloud Technology: GPU on Clouds", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: ajy-cloud-school-2012_0.pptx (2.96 MB)
[fg-2085] Figueiredo, R., "Cloud Technology: Virtual Private Clusters: Virtual Appliances and Networks in the Cloud", Science Cloud Summer School 2012, Bloomington, IN, University of Florida, 07/2012.  Download: cloud-summer-school12-figueiredo.ppt (1.41 MB)
[fg-2076] Kinney, J., "Commercial IaaS/PaaS I: AWS for Scientists", Science Cloud Summer School 2012, Bloomington, IN, Amazon Web Services, 07/2012.
[fg-2077] Gunarathne, T., "Commercial IaaS/PaaS II: Windows Azure and Twister4Azure", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2074] Qiu, J., "Data Mining with Iterative MapReduce: Twister & Twister4Azure", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2082] Parashar, M., and M. AbdelBaky, "Federating HPC, Cyberinfrastructure and Clouds using CometCloud", Science Cloud Summer School 2012, Bloomington, IN, Rutgers University, 07/2012.  Download: 1.introduction.pdf (1.51 MB); 2.cometcloud.masterworker.pdf (960.79 KB); 3.hands_on.pdf (455.36 KB); 4.cometcloud.mapreduce.pdf (648.24 KB); comet.xml (1.05 KB); CometCloud developer guide.pdf (129.23 KB); CometCloud installation guide-matrixmultiplication.pdf (137.91 KB); CometCloud installation guide-sample.pdf (121.87 KB)
[fg-2104] Mitchell, J., "Good Ole Hadoop! How We Love Thee!", Virtual Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: good_ole_hadoop.pptx (49.59 MB)
[fg-2133] Li, H., and J. Qiu, "Hands on Tutorial: Pig ", Virtual Cloud Summer School 2012, Bloomington, IN, 07/2012.
[fg-2110] Gunarathne, T., and H. Li, "HBase Hands-on Prerequisites and Resources", Virtual Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2101] Li, H., and J. Qiu, "High Level Language: Pig Latin", Virtual Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2079] von Laszewski, G., and J. Diaz, "IaaS in Action II: Eucalyptus OpenStack", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: OpenStackTutorial_slides.ppt (2.1 MB)
[fg-2081] von Laszewski, G., and J. Diaz, "IaaS in Action II: fg-move: Moving Resources Between Federated Clouds and Bare Metal", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: MoveTutorial_slides.pptx (2.52 MB)
[fg-2080] von Laszewski, G., and J. Diaz, "IaaS in Action II: RAIN Dynamic Provisioning on Bare Metal and IaaS", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: RainTutorial_slides.ppt (4.35 MB)
[fg-2066] Fox, G., "Infrastructure Used: FutureGrid", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2064] Fox, G., "Introduction", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2067] Hacker, T., "Introduction to virtual high performance computing clusters", Science Cloud Summer School 2012, Bloomington, IN, Purdue University, 07/2012.  Download: Science Cloud presentation_Final.pptx (8.23 MB)
[fg-2083] Ramakrishnan, L., "Magellan: Evaluating Cloud Computing for Science", Science Cloud Summer School 2012, Bloomington, IN, Lawrence Berkeley National Laboratory, 07/2012.  Download: Magellan.pdf (4.74 MB)
[fg-2073] Gao, X., H. Li, and T. Gunarathne, "MapReduce and NOSQL Cloud Storage", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2078] Swany, M., "Networking and Clouds", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.  Download: cloud-network-swany.pdf (393.51 KB)
[fg-2069] Bresnahan, J., "Nimbus Infrastructure: Hands-on Using IaaS Clouds", Science Cloud Summer School 2012, Bloomington, IN, University of Chicago/Argonne National Laboratory, 07/2012.  Download: Euca Hands On.pdf (521.88 KB); Boto Hands On.pdf (526.72 KB)
[fg-2070] Bresnahan, J., K. Keahey, and M. Wilde, "Nimbus Platform: Managing Deployments in Multi-Cloud Environments", Science Cloud Summer School 2012, Bloomington, IN, University of Chicago/Argonne National Laboratory, 07/2012.  Download: Swift for XSEDE Cloud Tutorial.2012.0716.pptx (7.81 MB); cloudinitd_and_phantom.pptx (21.27 MB)
[fg-2068] Bresnahan, J., and K. Keahey, "Nimbus: Introduction to IaaS Cloud Computing for Science", Science Cloud Summer School 2012, Bloomington, IN, University of Chicago/Argonne National Laboratory, 07/2012.  Download: nimbus intro.pptx (8.34 MB)
[fg-2071] Chandra, A., "Running MapReduce in Non-Traditional Environments", Science Cloud Summer School 2012, Bloomington, IN, University of Minnesota, 07/2012.  Download: 
[fg-2084] Juve, G., "Scientific Workflows in the Cloud", Science Cloud Summer School 2012, Bloomington, IN, USC, 07/2012.  Download: juve_cloud_summer_school.ppt (4.78 MB)
[fg-2129] Wu, T. - L., "Tutorial: Reproducible Environment for Scientific Applications", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-2072] Klinginsmith, J., "Virtual Clusters Supporting MapReduce in Cloud", Science Cloud Summer School 2012, Bloomington, IN, Indiana University, 07/2012.
[fg-1932] Diaz, J., G. von Laszewski, F. Wang, and G. Fox, "Abstract Image Management and Universal Image Registration for Cloud and HPC Infrastructures", IEEE CLOUD 2012, 5th International Conference on Cloud Computing, Honolulu, Hawaii, IEEE, 06/2012.  Download: jdiaz-IEEECloud2012_id-4656.pdf (555.62 KB); _ImageManagement_slides.ppt (4.12 MB)
[fg-1933] von Laszewski, G., J. Diaz, F. Wang, and G. Fox, "Comparison of Multiple Cloud Frameworks", IEEE CLOUD 2012, 5th International Conference on Cloud Computing, Honolulu, Hawaii, IEEE, 06/2012.  Download: laszewski-IEEECloud2012_id-4803.pdf (603.3 KB)
[fg-1909] Lee, K., D. I. Wolinsky, and R. Figueiredo, "PonD : Dynamic Creation of HTC Pool on Demand Using a Decentralized Resource Discovery System", Proceedings of the 21st international symposium on High Performance Distributed Computing (HPDC), Delft, the Netherlands, ACM, 06/2012.
[fg-1913] Yin, W., Y. Simmhan, and V. Prasanna, "Scalable Regression Tree Learning on Hadoop using OpenPlanet", International Workshop on MapReduce and its Applications (MAPREDUCE), 06/2012.
[fg-1916] Peluso, S., P. Ruivo, P. Romano, F. Quaglia, and L. Rodrigues, "When Scalability Meets Consistency: Genuine Multiversion Update-Serializable Partial Data Replication", The 32nd International Conference on Distributed Computing Systems, Macau, China, IEEE, 06/2012.
[fg-1469] Chen, W., and E. Deelman, "Integration of Workflow Partitioning and Resource Provisioning", The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2012), Ottawa, Canada, 05/2012.
[fg-261-05-2012-a] Guo, Z., G. Fox, and M. Zhou, "Investigation of Data Locality in MapReduce", Proceedings of the 2012 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (ccgrid 2012), Ottawa, Canada, IEEE Computer Society, pp. 419–426, 05/2012. Abstract
[fg-1471] Desprez, F., G. Fox, E. Jeannot, K. Keahey, M. Kozuch, D. Margery, P. Neyron, L. Nussbaum, C. Perez, O. Richard, et al., "Supporting Experimental Computer Science", Published as ANL MCS Technical Memo 326, Argonne, Argonne National Laboratory, 03/2012.
[fg-2150] , Cygwin 1.7.16-1, , 2012.  Download: cygwin.zip (46.3 MB)
[ruan2012dacidr] Ruan, Y., S. Ekanayake, M. Rho, H. Tang, S. - H. Bae, J. Qiu, and G. Fox, "DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences", Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine: ACM, pp. 329–336, 2012.
[ResStealAndBASE] Guo, Z., G. Fox, M. Zhou, and Y. Ruan, "Improving Resource Utilization in MapReduce", the 2012 IEEE International Conference on Cluster Computing, Beijing, China, IEEE Computer Society, 2012.
[Guo:2012:IDL:2287016.2287022] Guo, Z., G. Fox, and M. Zhou, "Investigation of data locality and fairness in MapReduce", Proceedings of third international workshop on MapReduce and its Applications Date, Delft, The Netherlands, ACM, pp. 25–32, 2012.
[fg-2063] von Laszewski, G., J. Bresnahan, and F. Wang, "Signing up for a FutureGrid Account", Science Cloud Summer School 2012, vol. 2012, no. 07/2012, Bloomington, FutureGrid Portal, 2012.
2011
[fg-2292] Klinginsmith, J., M. Mahoui, and Y. M. Wu, "Towards Reproducible eScience in the Cloud", Cloud Computing Technology and Science (CloudCom), 2011 IEEE Third International Conference on, Athens, pp. 582-586, November, 2011. Abstract
[5719579] Chen, D., L. Wang, G. Ouyang, and X. Li, "Massively Parallel Neural Signal Processing on a Many-Core Platform", Computing in Science Engineering, vol. 13, no. 6, pp. 42 -51, nov.-dec., 2011.
[fg-2265] Funika, W., and P. Koperek, "Automatic Scaling in Cloud Computing Environments Based on Business Metrics", Conference on Parallel Programming and Applied Mathematics (PPAM'2011), 11-14 September 2011, Torun, Poland, LNCS, Springer, 2012 : NA, NA, 2011.
[6133211] Juve, G., and E. Deelman, "Automating Application Deployment in Infrastructure Clouds", Cloud Computing Technology and Science (CloudCom), 2011 IEEE Third International Conference on, pp. 658 -665, 29 2011-dec. 1. Abstract